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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
5
RRBS
total RNA-seq
2
Hi-C
2
small RNA-seq
1
ATAC-seq
1
DNase-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
32
DNA binding
5
DNA methylation
3
DNA accessibility
3
Transcription
2
3D chromatin structure
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
5
control
Date released
26
August, 2017
11
June, 2019
3
July, 2019
3
March, 2020
2
May, 2022
1
January, 2018
Available data
25
bigWig
22
bed narrowPeak
15
tagAlign
14
bed broadPeak
13
bam
9
bigBed narrowPeak
3
bed bedMethyl
3
bigBed bedMethyl
3
tsv
2
bed bed3+
2
bedpe bed3+
2
fastq
2
hic
1
bigBed broadPeak
1
txt
Organism
46
Homo sapiens
Biosample type
33
tissue
13
primary cell
Organ
602
liver
543
pancreas
393
epithelium
321
heart
294
kidney
269
brain
210
connective tissue
175
vasculature
169
blood vessel
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
46
AMP
Genome assembly (visualization)
31
hg19
11
GRCh38
Lab
46
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
assay_title!
CRISPR genome editing followed by DNA sequencing
total RNA-seq
organ_slims!
limb
BIOSAMPLE
ASSAY
46 results
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ChIP-seq
RRBS
Hi-C
small RNA-seq
ATAC-seq
DNase-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
psoas muscle
2
1
primary cell
skeletal muscle satellite cell
8
1
skeletal muscle cell
2
1
1
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