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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
143
ChIP-seq
134
total RNA-seq
38
ATAC-seq
5
pCHi-C
4
GRO-seq
2
Capture-C
2
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
143
DNA binding
136
Transcription
39
DNA accessibility
2
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
121
May, 2021
52
August, 2017
35
August, 2021
31
February, 2018
30
December, 2017
26
February, 2021
16
February, 2023
8
March, 2020
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
246
bam
215
bigWig
129
tsv
108
fastq
90
bed narrowPeak
28
tagAlign
21
bed bed3+
10
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
5
bedpe bed3+
3
txt
2
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
331
Homo sapiens
Biosample type
2340
tissue
948
primary cell
613
cell line
331
in vitro differentiated cells
9
stem cell
Organ
79
connective tissue
21
embryo
16
epithelium
10
liver
2
pancreas
1
adipose tissue
1
heart
Project
331
AMP
Genome assembly (visualization)
249
hg19
221
GRCh38
4
hg18
Lab
287
AMP-T2D consortium
37
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
107
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
15
inconsistent control read length
assay_title!
CRISPR genome editing followed by DNA sequencing
target.investigated_as!
narrow histone mark
month_released!
October, 2019
BIOSAMPLE
ASSAY
331 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Capture-C
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
51
5
6
1
1
cardiomyocytes
3
59
embryonic stem cell
29
7
6
1
neural progenitor cell
14
7
10
cardiac precursors (cardiac muscle cell)
18
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