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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
20
ChIP-seq
5
total RNA-seq
3
single cell RNA-seq
2
RNA microarray
Assay category
187
DNA accessibility
20
DNA binding
8
Transcription
Target of assay
19
histone
19
histone modification
narrow histone mark
8
broad histone mark
8
control
4
RNA binding protein
4
transcription factor
Date released
715
February, 2021
368
November, 2017
335
May, 2021
323
August, 2017
314
May, 2020
308
August, 2021
207
June, 2019
202
February, 2023
200
May, 2022
173
October, 2019
168
July, 2018
108
July, 2019
88
November, 2018
86
May, 2019
78
December, 2017
65
October, 2018
61
March, 2020
59
September, 2020
58
September, 2018
57
April, 2019
57
November, 2019
49
April, 2018
47
September, 2023
35
December, 2018
31
February, 2018
27
January, 2019
25
February, 2020
25
May, 2024
21
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
212
bam
204
bigWig
199
bed narrowPeak
199
bigBed narrowPeak
187
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
9
tsv
Organism
217
Homo sapiens
Biosample type
166
tissue
49
primary cell
2
in vitro differentiated cells
Organ
83
kidney
39
musculature of body
33
heart
32
limb
30
brain
24
epithelium
18
ureter
14
connective tissue
7
liver
7
vasculature
6
eye
5
blood vessel
4
pancreas
2
artery
1
adipose tissue
Project
217
AMP
Genome assembly (visualization)
204
GRCh38
181
hg19
Lab
217
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
4
audit script error
assay_title!
CRISPR genome editing followed by DNA sequencing
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
217 results
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Clear Filters
DNase-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
RNA microarray
tissue
heart
18
muscle of arm
17
kidney
13
1
muscle of leg
13
brain
12
+ See 36 more…
primary cell
cardiac fibroblast
3
3
hepatocyte
1
5
mesenchymal stem cell
5
skeletal muscle satellite cell
5
cardiac muscle cell
1
2
+ See 17 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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