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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
32
ChIP-seq
21
ATAC-seq
1
pCHi-C
Assay category
127
Transcription
32
DNA binding
21
DNA accessibility
Target of assay
22
histone
22
histone modification
16
transcription factor
narrow histone mark
10
broad histone mark
6
control
5
RNA binding protein
Date released
667
February, 2021
362
November, 2017
306
August, 2021
286
August, 2017
181
May, 2021
167
May, 2020
163
June, 2019
148
October, 2019
120
July, 2018
114
February, 2023
87
November, 2018
82
May, 2019
78
December, 2017
77
July, 2019
66
May, 2022
63
October, 2018
60
March, 2020
57
April, 2019
57
November, 2019
47
September, 2023
35
December, 2018
31
February, 2018
27
January, 2019
25
February, 2020
25
May, 2024
21
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
130
bigWig
126
bam
121
tsv
5
tagAlign
4
bed narrowPeak
Organism
181
Homo sapiens
Biosample type
primary cell
121
in vitro differentiated cells
40
tissue
20
cell line
Organ
59
pancreas
24
epithelium
3
heart
2
embryo
1
connective tissue
1
thymus
Project
180
AMP
1
T1D
Genome assembly (visualization)
130
hg19
125
GRCh38
Lab
142
AMP-T2D consortium
39
Kyle Gaulton, UCSD
Audit category:
88
inconsistent ontology term
assay_title!
CRISPR genome editing followed by DNA sequencing
target.investigated_as!
narrow histone mark
biosample_type!
primary cell
BIOSAMPLE
ASSAY
181 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
27
5
induced pluripotent stem cell
9
pancreatic PP cell
2
cardiac fibroblast
1
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tissue
islet of Langerhans
36
cardiac atrium
1
cardiac ventricle
1
pancreas
1
thymus
1
cell line
EndoC_BH1
4
16
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