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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
Hi-C
Assay category
1653
DNA binding
1379
Transcription
578
DNA accessibility
44
DNA methylation
24
3D chromatin structure
1
DNA sequencing
Date released
9
March, 2020
8
July, 2019
4
October, 2019
1
August, 2021
1
December, 2018
1
March, 2023
Available data
15
hic
13
bedpe bed3+
4
bed bed3+
4
bigWig
4
hdf5
1
fastq
Organism
24
Homo sapiens
Biosample type
11
tissue
7
primary cell
4
in vitro differentiated cells
2
cell line
Organ
pancreas
8
epithelium
6
musculature of body
5
blood vessel
5
vasculature
4
limb
4
liver
3
brain
3
heart
2
vein
1
connective tissue
Project
23
AMP
1
ITG
Genome assembly (visualization)
18
hg19
1
GRCh38
Lab
22
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
Katalin Susztak, Upenn
Audit category:
4
inconsistent ontology term
1
audit script error
assay_title!
CRISPR genome editing followed by sgRNA sequencing
lab.title!
Katalin Susztak, Upenn
organ_slims!
pancreas
BIOSAMPLE
ASSAY
24 results
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Hi-C
tissue
gastrocnemius medialis
4
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 2 more…
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
2
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