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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
single cell RNA-seq
149
total RNA-seq
2
small RNA-seq
Assay category
338
Transcription
280
DNA accessibility
162
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
76
February, 2023
56
September, 2020
48
July, 2018
43
April, 2018
33
May, 2022
27
September, 2018
18
July, 2019
13
February, 2021
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
May, 2020
2
May, 2021
2
October, 2018
2
October, 2019
1
November, 2018
Available data
248
fastq
156
bam
156
bigWig
156
tsv
52
zippedFastqFolder
2
csv
Organism
338
Homo sapiens
Biosample type
1215
tissue
338
primary cell
133
in vitro differentiated cells
115
cell line
2
stem cell
Organ
163
epithelium
155
pancreas
15
connective tissue
6
kidney
5
liver
4
heart
3
brain
2
adipose tissue
2
artery
2
blood vessel
2
musculature of body
2
vasculature
1
pericardium
Project
177
HPAP
161
AMP
Genome assembly (visualization)
156
GRCh38
156
hg19
Lab
177
Klaus Kaestner, Upenn
161
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
assay_title!
CRISPR genome editing followed by sgRNA sequencing
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
338 results
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single cell RNA-seq
total RNA-seq
small RNA-seq
primary cell
Langerhans cell
85
pancreatic alpha cell
12
52
exocrine cell
39
pancreatic beta cell
12
21
pancreatic acinar cell
12
4
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