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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
182
total RNA-seq
34
ATAC-seq
Assay category
182
Transcription
165
DNA binding
34
DNA accessibility
1
DNA methylation
Date released
612
February, 2021
290
May, 2020
262
August, 2021
216
May, 2021
199
February, 2023
187
June, 2019
168
July, 2018
159
May, 2022
100
August, 2017
73
July, 2019
63
October, 2019
59
September, 2020
49
April, 2018
47
September, 2023
46
November, 2019
41
September, 2018
25
February, 2020
19
April, 2020
19
March, 2020
16
January, 2021
15
February, 2018
15
May, 2023
11
November, 2018
8
December, 2019
8
October, 2017
7
August, 2020
6
November, 2020
5
January, 2019
5
September, 2017
4
March, 2019
4
March, 2023
3
August, 2018
3
January, 2018
3
June, 2018
2
October, 2018
1
August, 2022
Available data
186
bam
180
bigWig
173
tsv
13
bed narrowPeak
2
bed bed3+
Organism
216
Homo sapiens
Biosample type
89
in vitro differentiated cells
68
primary cell
39
tissue
20
cell line
Organ
57
pancreas
22
epithelium
3
heart
2
embryo
1
connective tissue
Project
165
AMP
51
T1D
Genome assembly (visualization)
193
hg19
186
GRCh38
Lab
152
AMP-T2D consortium
64
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
assay_title!
CRISPR genome editing followed by sgRNA sequencing
BIOSAMPLE
ASSAY
216 results
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total RNA-seq
ATAC-seq
in vitro differentiated cells
cardiomyocytes
59
embryonic stem cell
5
5
induced pluripotent stem cell
9
cardiac fibroblast
1
cardiomyocytes (cardiac muscle cell)
1
+ See 9 more…
primary cell
monocyte
52
13
CD8-positive, alpha-beta T cell
2
embryonic stem cell
1
tissue
islet of Langerhans
36
cardiac atrium
1
cardiac ventricle
1
pancreas
1
cell line
EndoC_BH1
4
16
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