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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ATAC-seq
40
ChIP-seq
23
DNase-seq
17
WGBS
1
Hi-C
Assay category
145
DNA accessibility
40
DNA binding
17
DNA methylation
1
3D chromatin structure
Target of assay
88
histone
88
histone modification
broad histone mark
31
narrow histone mark
9
transcription factor
6
RNA binding protein
3
recombinant protein
Date released
64
August, 2021
35
February, 2023
23
June, 2019
20
May, 2024
18
November, 2017
11
May, 2023
9
July, 2019
9
November, 2018
7
August, 2020
3
September, 2020
2
August, 2017
1
March, 2023
1
October, 2017
Available data
162
bed narrowPeak
92
bigWig
64
xls
62
bam
43
bigBed narrowPeak
24
fastq
23
bed bed3+
23
bed broadPeak
23
bigBed broadPeak
17
bed bedMethyl
17
bigBed bedMethyl
11
tagAlign
1
hic
Organism
203
Homo sapiens
Biosample type
180
tissue
18
primary cell
5
cell line
Organ
82
kidney
64
heart
37
blood vessel
37
vasculature
35
artery
28
brain
16
epithelium
16
pancreas
5
liver
3
connective tissue
2
adipose tissue
2
spleen
1
limb
1
musculature of body
Project
192
AMP
10
HPAP
1
ITG
Genome assembly (visualization)
hg19
2735
GRCh38
5
hg18
Lab
97
AMP-T2D consortium
75
Katalin Susztak, Upenn
20
Patrick T. Ellinor, Broad
10
Klaus Kaestner, Upenn
1
ITG
assay_title!
CRISPR genome editing followed by sgRNA sequencing
assembly!
hg19
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
203 results
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Clear Filters
ATAC-seq
ChIP-seq
DNase-seq
WGBS
Hi-C
tissue
kidney
75
coronary artery
35
left cardiac atrium
20
layer of hippocampus
6
body of pancreas
2
2
+ See 26 more…
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
cardiac fibroblast
1
+ See 3 more…
cell line
HepG2
4
1
See all biosamples
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