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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
898
total RNA-seq
543
ChIP-seq
150
ATAC-seq
141
DNase-seq
16
small RNA-seq
15
WGBS
Assay category
914
Transcription
543
DNA binding
291
DNA accessibility
15
DNA methylation
Target of assay
447
histone modification
446
histone
238
narrow histone mark
208
broad histone mark
93
transcription factor
27
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
446
February, 2021
162
May, 2020
158
August, 2017
131
June, 2019
116
July, 2018
109
October, 2019
87
May, 2019
64
April, 2019
64
August, 2021
60
July, 2019
57
November, 2017
45
October, 2018
40
May, 2024
39
November, 2019
38
May, 2021
36
December, 2017
35
February, 2023
22
November, 2018
14
October, 2017
12
May, 2023
9
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
March, 2019
2
September, 2017
Available data
1622
bigWig
1607
bam
913
tsv
792
bed narrowPeak
472
bigBed narrowPeak
280
fastq
168
bed bed3+
155
bed broadPeak
140
bigBed broadPeak
116
tagAlign
64
xls
15
bed bedMethyl
15
bigBed bedMethyl
1
tagAlign bed3+
Organism
1757
Homo sapiens
Biosample type
1763
tissue
536
primary cell
464
cell line
265
in vitro differentiated cells
3
stem cell
Organ
480
connective tissue
422
adipose tissue
386
pancreas
238
liver
203
brain
191
heart
165
kidney
105
blood vessel
105
vasculature
limb
66
bone element
62
artery
42
musculature of body
31
nerve
18
ureter
16
spleen
8
skeleton
3
eye
1
pituitary gland
Project
1761
AMP
2
T1D
Genome assembly (visualization)
1763
GRCh38
1659
hg19
Lab
1645
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
CRISPR genome editing followed by sgRNA sequencing
organ_slims!
limb
BIOSAMPLE
ASSAY
1763 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
small RNA-seq
WGBS
tissue
adipose tissue
382
1
2
islet of Langerhans
266
25
22
1
liver
147
75
2
1
kidney
20
75
13
bone tissue
58
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