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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
14
total RNA-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
Assay category
27
DNA binding
14
Transcription
2
DNA accessibility
2
DNA methylation
Target of assay
17
histone
17
histone modification
9
narrow histone mark
9
transcription factor
8
broad histone mark
3
other context
3
other post-translational modification
1
control
Date released
10
February, 2018
9
December, 2017
8
August, 2021
6
January, 2019
6
November, 2018
3
December, 2018
2
May, 2021
1
October, 2017
Available data
45
bam
44
bigWig
35
fastq
28
bed narrowPeak
14
tsv
13
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bigBed broadPeak
Organism
45
Homo sapiens
Biosample type
21
in vitro differentiated cells
16
tissue
8
cell line
Organ
635
pancreas
566
connective tissue
531
liver
424
adipose tissue
294
epithelium
266
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
45
AMP
Genome assembly (visualization)
45
GRCh38
43
hg19
1
hg18
Lab
45
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
3
inconsistent control read length
assay_title!
CRISPR genome editing followed by sgRNA sequencing
BIOSAMPLE
ASSAY
45 results
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ChIP-seq
total RNA-seq
WGBS
ATAC-seq
DNase-seq
in vitro differentiated cells
pancreatic endoderm
13
4
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
tissue
spleen
12
2
1
1
cell line
H1-hESC
8
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