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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
DNase-seq
113
ChIP-seq
2
ATAC-seq
Assay category
196
DNA accessibility
113
DNA binding
Target of assay
64
histone
64
histone modification
49
transcription factor
36
broad histone mark
28
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
178
June, 2019
70
November, 2017
39
August, 2017
9
October, 2019
8
November, 2018
4
October, 2017
1
March, 2019
Available data
2600
bam
2417
bigWig
1690
bed narrowPeak
1246
fastq
1000
bigBed narrowPeak
973
tsv
373
tagAlign
309
bed broadPeak
273
bigBed broadPeak
243
bed bed3+
153
zippedFastqFolder
76
txt
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
18
hic
15
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
cool
2
bed bedgraph
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
303
Homo sapiens
Biosample type
209
tissue
59
cell line
41
primary cell
Organ
77
kidney
63
liver
47
brain
45
musculature of body
35
limb
29
heart
21
epithelium
21
pancreas
18
ureter
16
vasculature
13
blood vessel
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
309
AMP
Genome assembly (visualization)
286
hg19
270
GRCh38
Lab
307
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
assay_title!
CRISPR genome editing followed by sgRNA sequencing
audit.ERROR.category!
inconsistent ontology term
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
309 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
skeletal muscle tissue
13
+ See 43 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
+ See 12 more…
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