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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
13
RRBS
12
WGBS
6
ATAC-seq
4
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
65
Transcription
25
DNA methylation
8
DNA accessibility
4
3D chromatin structure
Target of assay
3
control
Date released
585
February, 2021
406
November, 2017
378
August, 2017
333
May, 2020
311
August, 2021
307
May, 2021
283
October, 2019
199
May, 2022
191
February, 2023
162
July, 2018
117
May, 2019
102
July, 2019
80
April, 2019
79
November, 2018
76
October, 2018
75
December, 2017
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
9
June, 2019
9
November, 2020
9
September, 2017
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
85
bigWig
82
bam
65
tsv
21
bed bedMethyl
21
bigBed bedMethyl
7
bed narrowPeak
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
102
Homo sapiens
Biosample type
77
tissue
25
primary cell
Organ
24
heart
16
connective tissue
15
brain
12
adipose tissue
10
epithelium
10
kidney
10
musculature of body
10
vasculature
9
blood vessel
9
liver
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
102
AMP
Genome assembly (visualization)
85
hg19
79
GRCh38
Lab
102
AMP-T2D consortium
Audit category:
inconsistent ontology term
assay_title!
CRISPR genome editing followed by sgRNA sequencing
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
102 results
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total RNA-seq
small RNA-seq
RRBS
WGBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 26 more…
primary cell
cerebellar granule cell
2
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
+ See 15 more…
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