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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ATAC-seq
70
total RNA-seq
53
WGBS
37
single cell RNA-seq
22
snATAC-seq
18
small RNA-seq
13
RRBS
8
Hi-C
2
FAIRE-seq
Assay category
125
Transcription
107
DNA accessibility
66
DNA methylation
8
3D chromatin structure
Target of assay
3
control
Date released
587
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
316
August, 2021
309
May, 2021
291
October, 2019
200
May, 2022
193
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
106
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
106
bam
105
bigWig
65
tsv
45
bed narrowPeak
24
fastq
21
bed bedMethyl
21
bigBed bedMethyl
7
txt
5
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
306
Homo sapiens
Biosample type
163
primary cell
143
tissue
Organ
110
pancreas
92
epithelium
50
liver
24
heart
18
brain
17
connective tissue
12
adipose tissue
12
musculature of body
12
vasculature
11
blood vessel
10
kidney
5
limb
3
artery
2
pericardium
1
eye
Project
172
AMP
134
HPAP
Genome assembly (visualization)
128
hg19
79
GRCh38
Lab
134
Klaus Kaestner, Upenn
108
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
1
audit script error
assay_title!
CRISPR genome editing followed by sgRNA sequencing
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
306 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
small RNA-seq
RRBS
Hi-C
FAIRE-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
cerebellar granule cell
2
+ See 23 more…
tissue
liver
20
22
1
islet of Langerhans
18
6
1
heart left ventricle
2
2
4
1
omental fat pad
4
1
right lobe of liver
2
1
2
+ See 26 more…
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