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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
46
total RNA-seq
18
small RNA-seq
13
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
74
DNA binding
67
Transcription
25
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
32
control
30
histone
30
histone modification
19
broad histone mark
15
transcription factor
11
RNA binding protein
11
narrow histone mark
Date released
587
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
316
August, 2021
309
May, 2021
291
October, 2019
200
May, 2022
193
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
106
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
158
bam
132
bigWig
67
tsv
60
fastq
52
bed narrowPeak
47
bigBed narrowPeak
21
bed bedMethyl
21
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
182
Homo sapiens
Biosample type
151
tissue
31
primary cell
Organ
59
pancreas
40
connective tissue
35
adipose tissue
24
heart
18
brain
14
epithelium
12
vasculature
11
blood vessel
10
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
182
AMP
Genome assembly (visualization)
136
hg19
126
GRCh38
Lab
182
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
1
inconsistent control read length
assay_title!
CRISPR genome editing followed by sgRNA sequencing
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
182 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
body of pancreas
33
2
2
subcutaneous adipose tissue
12
4
1
endocrine pancreas
16
omental fat pad
11
4
1
heart left ventricle
2
1
4
2
+ See 27 more…
primary cell
cerebellar granule cell
2
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
pancreatic acinar cell
2
renal cortical epithelial cell
1
1
+ See 20 more…
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