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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
total RNA-seq
32
ChIP-seq
20
ATAC-seq
18
small RNA-seq
13
RRBS
12
WGBS
8
Hi-C
4
single cell RNA-seq
2
FAIRE-seq
Assay category
92
Transcription
32
DNA binding
25
DNA methylation
22
DNA accessibility
8
3D chromatin structure
Target of assay
32
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
3
control
Date released
587
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
316
August, 2021
309
May, 2021
291
October, 2019
200
May, 2022
193
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
106
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
157
bigWig
154
bam
91
tsv
73
fastq
53
bed narrowPeak
21
bed bedMethyl
21
bigBed bedMethyl
16
bigBed narrowPeak
4
bed bed3+
4
hdf5
1
csv
Organism
179
Homo sapiens
Biosample type
102
primary cell
77
tissue
Organ
78
pancreas
73
epithelium
24
heart
18
brain
17
connective tissue
12
adipose tissue
12
vasculature
11
blood vessel
10
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
179
AMP
Genome assembly (visualization)
161
hg19
151
GRCh38
Lab
179
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
32
missing controlled_by
assay_title!
CRISPR genome editing followed by sgRNA sequencing
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
179 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
primary cell
pancreatic ductal cell
4
13
4
pancreatic beta cell
10
4
pancreatic acinar cell
2
8
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 25 more…
tissue
heart left ventricle
2
2
1
4
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 26 more…
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