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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
total RNA-seq
15
small RNA-seq
13
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
53
Transcription
25
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
3
control
Date released
406
November, 2017
354
August, 2017
333
May, 2020
315
August, 2021
309
May, 2021
290
October, 2019
201
February, 2021
200
May, 2022
192
February, 2023
191
June, 2019
162
July, 2018
117
May, 2019
94
July, 2019
90
December, 2017
87
November, 2018
80
April, 2019
73
September, 2018
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
46
March, 2020
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
22
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
2
June, 2018
1
August, 2022
Available data
73
bigWig
70
bam
53
tsv
21
bed bedMethyl
21
bigBed bedMethyl
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
94
Homo sapiens
Biosample type
67
tissue
27
primary cell
Organ
24
heart
18
brain
17
connective tissue
adipose tissue
12
epithelium
12
vasculature
11
blood vessel
10
kidney
10
liver
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
94
AMP
Genome assembly (visualization)
77
hg19
67
GRCh38
Lab
94
AMP-T2D consortium
Audit category:
inconsistent ontology term
assay_title!
CRISPR genome editing followed by sgRNA sequencing
audit.ERROR.category!
inconsistent ontology term
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
94 results
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total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
right lobe of liver
2
2
1
body of pancreas
2
2
gastrocnemius medialis
4
heart
2
1
1
+ See 24 more…
primary cell
cerebellar granule cell
2
kidney epithelial cell
1
1
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
+ See 18 more…
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