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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
306
total RNA-seq
96
ATAC-seq
50
ChIP-seq
42
single cell RNA-seq
1
pCHi-C
Assay category
348
Transcription
96
DNA accessibility
50
DNA binding
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
587
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
316
August, 2021
309
May, 2021
291
October, 2019
200
May, 2022
193
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
106
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
433
bam
410
bigWig
343
tsv
50
tagAlign
44
fastq
27
bed narrowPeak
Organism
495
Homo sapiens
Biosample type
313
tissue
181
primary cell
1
cell line
Organ
194
liver
152
pancreas
32
epithelium
2
connective tissue
Project
454
AMP
41
T1D
Genome assembly (visualization)
410
hg19
361
GRCh38
Lab
454
AMP-T2D consortium
41
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
assay_title!
CRISPR genome editing followed by sgRNA sequencing
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
495 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
pCHi-C
tissue
liver
143
50
islet of Langerhans
120
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
pancreatic beta cell
9
pancreatic alpha cell
7
+ See 34 more…
cell line
HepG2
1
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