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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
8
snATAC-seq
1
ATAC-seq
1
DNase-seq
1
RRBS
Assay category
63
DNA binding
10
DNA accessibility
1
DNA methylation
Target of assay
52
transcription factor
11
RNA binding protein
10
chromatin remodeller
7
control
2
histone
2
histone modification
2
narrow histone mark
Date released
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
4
June, 2019
1
January, 2018
1
July, 2019
Available data
64
bam
60
fastq
58
bigWig
57
bed narrowPeak
57
bigBed narrowPeak
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
Organism
74
Homo sapiens
Biosample type
61
cell line
tissue
13
primary cell
Organ
508
epithelium
440
pancreas
430
liver
137
connective tissue
103
vasculature
97
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
55
kidney
37
embryo
22
vein
21
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
66
AMP
8
T1D
Genome assembly (visualization)
59
hg19
57
GRCh38
Lab
66
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
assay_title!
CRISPR genome editing followed by sgRNA sequencing
biosample_type!
tissue
BIOSAMPLE
ASSAY
74 results
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Clear Filters
ChIP-seq
snATAC-seq
ATAC-seq
DNase-seq
RRBS
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
retinal pigment epithelial cell
3
1
1
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