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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
10
ATAC-seq
4
Hi-C
2
total RNA-seq
Assay category
33
DNA binding
10
DNA accessibility
4
3D chromatin structure
2
Transcription
Target of assay
30
histone
30
histone modification
20
broad histone mark
10
narrow histone mark
3
control
Date released
35
May, 2021
7
August, 2020
4
July, 2019
3
September, 2020
Available data
613
bigWig
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
49
Homo sapiens
Biosample type
49
primary cell
48
tissue
18
cell line
16
in vitro differentiated cells
1
stem cell
Organ
12
epithelium
10
pancreas
3
brain
2
blood vessel
2
vasculature
1
connective tissue
1
liver
Project
39
AMP
10
HPAP
Genome assembly (visualization)
39
hg19
10
GRCh38
Lab
35
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
4
AMP-T2D consortium
assay_title!
CRISPR genome editing followed by sgRNA sequencing
files.file_type!
bam
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
primary cell
CD8-positive, alpha-beta T cell
33
2
pancreatic alpha cell
7
pancreatic beta cell
3
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
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