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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
348
ChIP-seq
5
DNase-seq
1
ATAC-seq
Assay category
348
DNA binding
6
DNA accessibility
Target of assay
310
transcription factor
78
recombinant protein
54
RNA binding protein
35
histone
35
histone modification
23
chromatin remodeller
21
broad histone mark
14
narrow histone mark
2
other context
2
other post-translational modification
Date released
247
November, 2017
50
December, 2017
49
November, 2018
6
August, 2017
2
June, 2019
Available data
617
bigWig
585
bam
437
bed narrowPeak
390
fastq
354
bigBed narrowPeak
162
tsv
63
bed broadPeak
63
bigBed broadPeak
42
tagAlign
13
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
hdf5
Organism
354
Homo sapiens
Biosample type
289
cell line
49
tissue
14
in vitro differentiated cells
2
primary cell
Organ
354
liver
97
kidney
91
heart
89
pancreas
84
limb
82
vasculature
78
blood vessel
70
epithelium
65
brain
54
blood
54
bodily fluid
47
musculature of body
27
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
354
AMP
Genome assembly (visualization)
354
hg19
326
GRCh38
Lab
354
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
assay_title!
CRISPR genome editing followed by sgRNA sequencing
BIOSAMPLE
ASSAY
354 results
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ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
289
tissue
liver
38
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatic stellate cell
1
hepatocyte
1
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