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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
ChIP-seq
200
DNase-seq
5
ATAC-seq
3
FAIRE-seq
Assay category
395
DNA binding
208
DNA accessibility
Target of assay
328
histone
328
histone modification
205
broad histone mark
123
narrow histone mark
67
transcription factor
26
RNA binding protein
4
chromatin remodeller
3
other context
3
other post-translational modification
Date released
206
June, 2019
96
May, 2019
64
April, 2019
63
November, 2017
62
October, 2019
50
December, 2017
25
August, 2017
14
November, 2018
6
January, 2019
6
October, 2017
5
October, 2018
3
December, 2018
2
July, 2019
1
November, 2020
Available data
2184
bam
2080
bigWig
1220
bed narrowPeak
1098
tsv
603
bigBed narrowPeak
460
fastq
359
tagAlign
243
bed bed3+
243
bed broadPeak
220
bigBed broadPeak
154
txt
73
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
15
bedpe bed3+
15
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
2
ibed
1
tagAlign bed3+
1
tar
Organism
603
Homo sapiens
Biosample type
499
tissue
cell line
87
primary cell
17
in vitro differentiated cells
Organ
127
brain
103
kidney
94
heart
84
limb
pancreas
83
vasculature
79
blood vessel
75
epithelium
65
liver
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
603
AMP
Genome assembly (visualization)
593
GRCh38
530
hg19
Lab
603
AMP-T2D consortium
Audit category:
27
inconsistent control
24
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
2
inconsistent assembly
2
inconsistent control read length
1
inconsistent control run_type
assay_title!
CRISPR genome editing followed by sgRNA sequencing
organ_slims!
pancreas
biosample_type!
cell line
BIOSAMPLE
ASSAY
603 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
tibial nerve
24
2
heart
7
18
+ See 49 more…
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
1
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
+ See 20 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
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