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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
28
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
49
DNA accessibility
28
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
7
control
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
60
February, 2021
35
February, 2023
26
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
102
bam
85
bigWig
74
bed narrowPeak
58
tsv
25
bigBed narrowPeak
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
135
Homo sapiens
Biosample type
73
tissue
60
cell line
2
primary cell
Organ
926
pancreas
705
liver
662
connective tissue
516
epithelium
483
adipose tissue
354
kidney
347
heart
230
vasculature
224
blood vessel
168
brain
159
bone element
135
artery
122
limb
81
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
135
AMP
Genome assembly (visualization)
124
GRCh38
89
hg19
Lab
135
AMP-T2D consortium
assay_title!
CRISPR genome editing followed by sgRNA sequencing
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
135 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
36
5
2
tibial artery
1
1
23
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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