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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
ChIP-seq
Assay category
101
DNA binding
Target of assay
193
histone
193
histone modification
101
broad histone mark
92
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
66
May, 2021
12
August, 2017
12
October, 2019
8
June, 2019
2
May, 2019
1
August, 2021
Available data
97
bigWig
95
bed narrowPeak
79
bam
51
tagAlign
21
bigBed narrowPeak
12
fastq
8
bed broadPeak
8
bigBed broadPeak
1
bed bed3+
Organism
101
Homo sapiens
Biosample type
299
tissue
101
primary cell
56
in vitro differentiated cells
19
cell line
1
stem cell
Organ
21
epithelium
9
blood vessel
9
vasculature
9
vein
6
pancreas
5
kidney
4
connective tissue
4
musculature of body
1
liver
Project
57
AMP
44
T1D
Genome assembly (visualization)
97
hg19
75
GRCh38
Lab
64
Kyle Gaulton, UCSD
37
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
1
inconsistent assembly
assay_title!
CRISPR genome editing followed by sgRNA sequencing
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
101 results
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ChIP-seq
primary cell
monocyte
44
CD8-positive, alpha-beta T cell
20
endothelial cell of umbilical vein
9
skeletal muscle myoblast
6
mesenchymal stem cell
4
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