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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
359
ChIP-seq
Assay category
359
DNA binding
Target of assay
740
histone modification
739
histone
379
narrow histone mark
359
broad histone mark
224
control
143
transcription factor
39
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
93
August, 2017
56
May, 2019
42
November, 2017
39
October, 2019
37
April, 2019
20
May, 2024
19
October, 2018
14
December, 2017
10
May, 2021
10
October, 2017
8
February, 2018
7
August, 2021
4
January, 2019
Available data
290
bed narrowPeak
290
bigWig
259
bam
211
bigBed narrowPeak
90
tagAlign
76
fastq
20
bed broadPeak
10
bed bed3+
Organism
355
Homo sapiens
Biosample type
303
tissue
122
primary cell
56
in vitro differentiated cells
19
cell line
1
stem cell
Organ
70
brain
57
heart
41
pancreas
40
connective tissue
36
blood vessel
36
vasculature
34
limb
32
liver
20
adipose tissue
16
musculature of body
16
nerve
14
artery
10
kidney
7
epithelium
4
embryo
4
spleen
Project
359
AMP
Genome assembly (visualization)
279
GRCh38
234
hg19
Lab
329
AMP-T2D consortium
20
Patrick T. Ellinor, Broad
10
Kyle Gaulton, UCSD
Audit category:
4
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
assay_title!
CRISPR genome editing followed by sgRNA sequencing
BIOSAMPLE
ASSAY
359 results
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Clear Filters
ChIP-seq
tissue
liver
22
left cardiac atrium
20
subcutaneous abdominal adipose tissue
20
tibial nerve
16
heart left ventricle
15
+ See 26 more…
in vitro differentiated cells
adipocyte
20
embryonic stem cell
11
hepatocyte
7
neural progenitor cell
7
pancreatic endoderm
4
+ See 5 more…
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