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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
6
Hi-C
total RNA-seq
3
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
35
DNA accessibility
6
3D chromatin structure
4
DNA methylation
3
Transcription
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
24
August, 2017
8
July, 2019
7
May, 2019
3
March, 2020
2
May, 2022
1
January, 2018
Available data
64
bigWig
60
bed narrowPeak
53
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
tsv
2
bedpe bed3+
fastq
2
hic
1
txt
Organism
88
Homo sapiens
Biosample type
75
tissue
13
primary cell
Organ
321
heart
294
kidney
256
pancreas
248
brain
217
epithelium
169
vasculature
166
blood vessel
142
liver
115
limb
109
connective tissue
97
bone element
88
musculature of body
85
artery
49
adipose tissue
42
eye
38
nerve
22
vein
20
lung
18
ureter
12
skeleton
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
88
AMP
Genome assembly (visualization)
67
hg19
49
GRCh38
Lab
88
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
CRISPRi RNA-seq
total RNA-seq
files.file_type!
fastq
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
DNase-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
2
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
psoas muscle
2
1
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primary cell
skeletal muscle satellite cell
8
1
skeletal muscle cell
2
1
1
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