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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
27
ChIP-seq
total RNA-seq
3
RRBS
2
Hi-C
2
small RNA-seq
1
ATAC-seq
1
snATAC-seq
Assay category
35
DNA accessibility
27
DNA binding
3
DNA methylation
2
3D chromatin structure
2
Transcription
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
Date released
41
June, 2019
15
August, 2017
6
May, 2019
3
July, 2019
2
March, 2020
1
January, 2018
1
May, 2022
Available data
63
bigWig
60
bed narrowPeak
49
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
13
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
2
tsv
1
txt
Organism
69
Homo sapiens
Biosample type
58
tissue
11
primary cell
Organ
466
liver
328
pancreas
235
epithelium
159
brain
121
connective tissue
119
heart
118
kidney
107
vasculature
101
blood vessel
92
limb
69
musculature of body
55
blood
55
bodily fluid
39
artery
34
eye
30
adipose tissue
27
nerve
18
ureter
17
vein
15
embryo
14
spleen
12
bone element
12
skeleton
1
pericardium
1
pituitary gland
Project
69
AMP
Genome assembly (visualization)
69
hg19
49
GRCh38
Lab
69
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
assay_title!
CRISPRi RNA-seq
total RNA-seq
BIOSAMPLE
ASSAY
69 results
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DNase-seq
ChIP-seq
RRBS
Hi-C
small RNA-seq
ATAC-seq
snATAC-seq
tissue
muscle of leg
13
6
skeletal muscle tissue
13
2
1
1
1
muscle of arm
17
psoas muscle
2
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
7
1
skeletal muscle cell
1
1
1
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