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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1173
total RNA-seq
1108
ChIP-seq
302
ATAC-seq
179
DNase-seq
176
single cell RNA-seq
87
RNA microarray
34
pCHi-C
28
snATAC-seq
27
WGBS
20
Hi-C
16
small RNA-seq
11
RRBS
5
GRO-seq
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
1
CRISPR RNA-seq
CRISPRi RNA-seq
Assay category
302
DNA accessibility
Date released
91
February, 2023
76
August, 2021
38
May, 2022
25
November, 2019
20
October, 2019
12
February, 2021
11
May, 2023
8
October, 2017
6
July, 2019
5
May, 2021
4
March, 2019
2
August, 2017
2
January, 2018
2
March, 2020
Available data
229
bed narrowPeak
81
bam
64
xls
55
bigWig
29
fastq
10
bed bed3
7
bed bedgraph
5
bigBed narrowPeak
4
bed bed3+
3
txt
2
bed broadPeak
1
tsv
Organism
302
Homo sapiens
Biosample type
260
tissue
primary cell
42
in vitro differentiated cells
cell line
Organ
75
kidney
62
pancreas
39
heart
38
blood vessel
38
vasculature
37
artery
28
eye
23
connective tissue
21
liver
12
bone element
12
epithelium
12
skeleton
8
limb
6
adipose tissue
4
brain
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
291
AMP
11
T1D
Genome assembly (visualization)
175
GRCh38
164
hg19
Lab
163
AMP-T2D consortium
75
Katalin Susztak, Upenn
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
11
inconsistent ontology term
assay_title!
CRISPRi RNA-seq
biosample_type!
cell line
primary cell
BIOSAMPLE
ASSAY
302 results
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Clear Filters
ATAC-seq
tissue
kidney
75
islet of Langerhans
68
coronary artery
36
liver
20
retina
15
+ See 29 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
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