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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
13
ATAC-seq
10
total RNA-seq
6
Hi-C
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
47
DNA accessibility
39
DNA binding
13
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
10
July, 2019
8
February, 2021
8
February, 2023
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
68
bed narrowPeak
68
bigWig
65
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
5
txt
4
bed bed3
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
112
Homo sapiens
Biosample type
98
tissue
14
primary cell
Organ
854
pancreas
684
connective tissue
491
adipose tissue
445
epithelium
390
liver
335
kidney
327
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
112
AMP
Genome assembly (visualization)
85
hg19
61
GRCh38
Lab
112
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
CRISPRi RNA-seq
biosample_type!
cell line
BIOSAMPLE
ASSAY
112 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
4
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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