Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
124
ChIP-seq
32
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
133
Transcription
124
DNA binding
33
DNA accessibility
4
3D chromatin structure
Target of assay
92
histone
92
histone modification
46
broad histone mark
45
narrow histone mark
transcription factor
32
control
6
RNA binding protein
3
chromatin remodeller
Date released
81
May, 2021
46
August, 2017
39
February, 2018
38
August, 2021
32
December, 2017
26
February, 2021
13
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
254
bam
212
bigWig
131
tsv
108
fastq
96
bed narrowPeak
36
tagAlign
17
bed bed3+
15
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
303
Homo sapiens
Biosample type
2336
tissue
514
primary cell
303
in vitro differentiated cells
265
cell line
8
stem cell
Organ
71
connective tissue
26
embryo
21
epithelium
13
liver
2
pancreas
1
adipose tissue
1
heart
Project
303
AMP
Genome assembly (visualization)
248
hg19
228
GRCh38
4
hg18
Lab
303
AMP-T2D consortium
35
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
111
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
7
inconsistent control read length
assay_title!
CRISPRi RNA-seq
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
303 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
adipocyte
5
45
7
1
neural progenitor cell
7
21
10
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
4
15
1
+ See 28 more…
See all biosamples
Download