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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
Hi-C
2
pCHi-C
1
whole genome sequencing assay
Assay category
3
3D chromatin structure
1
DNA sequencing
Date released
3
October, 2022
2
March, 2020
1
August, 2021
Available data
3392
bam
3169
bigWig
1817
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
6
Homo sapiens
Biosample type
3
primary cell
2
in vitro differentiated cells
1
cell line
Organ
3
epithelium
3
pancreas
1
liver
Project
3
AMP
3
HPAP
Genome assembly (visualization)
5
hg19
Lab
3
Klaus Kaestner, Upenn
2
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
3
audit script error
2
inconsistent ontology term
assay_title!
CRISPRi RNA-seq
BIOSAMPLE
ASSAY
6 results
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Clear Filters
Hi-C
pCHi-C
whole genome sequencing assay
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
1
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