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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
24
Transcription
21
DNA binding
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
16
control
8
histone
8
histone modification
5
broad histone mark
3
narrow histone mark
Date released
November, 2017
17
July, 2019
12
February, 2020
11
October, 2019
10
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
165
bam
156
bigWig
bed narrowPeak
64
bigBed narrowPeak
52
tagAlign
35
bed bed3+
35
bed broadPeak
32
bigBed broadPeak
26
tsv
12
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
56
Homo sapiens
Biosample type
49
tissue
7
primary cell
Organ
732
pancreas
609
connective tissue
478
adipose tissue
371
epithelium
284
liver
202
heart
171
kidney
151
bone element
101
vasculature
100
blood vessel
67
artery
56
brain
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
56
AMP
Genome assembly (visualization)
20
hg19
16
GRCh38
Lab
56
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_title!
CRISPRi RNA-seq
month_released!
November, 2017
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
56 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
9
1
1
1
cerebellum (Hemisphere)
1
1
1
1
temporal lobe
2
1
1
frontal cortex
2
1
Ammon's horn
1
1
+ See 21 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 1 more…
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