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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
255
ChIP-seq
198
ATAC-seq
56
snATAC-seq
47
WGBS
27
DNase-seq
17
pCHi-C
10
RRBS
9
Hi-C
1
DNAme array
Assay category
Transcription
281
DNA accessibility
255
DNA binding
58
DNA methylation
9
3D chromatin structure
Target of assay
216
histone
216
histone modification
110
broad histone mark
106
narrow histone mark
29
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
101
May, 2022
100
May, 2020
59
August, 2017
55
June, 2019
46
September, 2018
35
February, 2021
October, 2019
13
July, 2019
12
February, 2023
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
3
September, 2020
2
November, 2020
1
March, 2020
1
March, 2023
Available data
338
bigWig
328
bam
274
bed narrowPeak
161
fastq
101
zippedFastqFolder
100
tagAlign
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
33
bed bed3+
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
Organism
620
Homo sapiens
Biosample type
1330
tissue
620
primary cell
521
cell line
250
in vitro differentiated cells
8
stem cell
Organ
212
epithelium
191
pancreas
24
connective tissue
21
kidney
18
brain
14
vasculature
12
musculature of body
9
heart
8
blood
8
blood vessel
8
bodily fluid
8
liver
5
eye
1
bone element
1
bone marrow
1
vein
Project
364
AMP
147
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
350
hg19
264
GRCh38
Lab
331
AMP-T2D consortium
147
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
41
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
CRISPRi RNA-seq
month_released!
October, 2019
assay_slims!
Transcription
BIOSAMPLE
ASSAY
620 results
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ChIP-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
DNAme array
primary cell
monocyte
85
15
1
1
pancreatic alpha cell
13
35
31
1
pancreatic beta cell
13
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
2
1
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