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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
total RNA-seq
49
ChIP-seq
48
single cell RNA-seq
8
ATAC-seq
1
Hi-C
Assay category
168
Transcription
49
DNA binding
8
DNA accessibility
1
3D chromatin structure
Target of assay
28
transcription factor
12
histone
12
histone modification
10
broad histone mark
7
control
2
RNA binding protein
2
chromatin remodeller
2
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
4
August, 2018
4
March, 2023
4
October, 2022
3
June, 2018
1
August, 2022
Available data
213
bam
208
bigWig
164
tsv
102
fastq
42
bed narrowPeak
36
bigBed narrowPeak
14
tagAlign
4
bed broadPeak
Organism
226
Homo sapiens
Biosample type
150
tissue
48
primary cell
28
cell line
Organ
162
pancreas
33
epithelium
27
blood
27
bodily fluid
16
brain
8
spleen
3
connective tissue
1
adipose tissue
1
liver
Project
226
AMP
Genome assembly (visualization)
208
GRCh38
207
hg19
Lab
225
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
1
inconsistent control
Audit category:
4
missing controlled_by
assay_title!
CRISPRi RNA-seq
BIOSAMPLE
ASSAY
226 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
Hi-C
tissue
islet of Langerhans
120
1
brain
15
spleen
7
1
body of pancreas
4
cerebellum (Hemisphere)
1
+ See 1 more…
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
pancreatic cell
3
+ See 10 more…
cell line
GM12878
27
HepG2
1
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