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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
6
ATAC-seq
6
WGBS
2
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
Transcription
73
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
57
August, 2017
23
October, 2018
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
44
bam
43
fastq
27
bigWig
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
tsv
Organism
88
Homo sapiens
Biosample type
89
tissue
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
227
heart
202
connective tissue
169
vasculature
163
blood vessel
115
limb
97
bone element
89
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
89
AMP
Genome assembly (visualization)
27
hg19
25
GRCh38
Lab
89
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
CRISPRi RNA-seq
month_released!
August, 2018
assay_slims!
Transcription
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
RNA microarray
pCHi-C
tissue
subcutaneous abdominal adipose tissue
36
3
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
1
white adipose tissue
12
adipose tissue
2
3
3
1
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