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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
6
single cell RNA-seq
5
Hi-C
3
total RNA-seq
1
FAIRE-seq
1
WGBS
pCHi-C
Assay category
26
DNA binding
9
Transcription
5
3D chromatin structure
1
DNA accessibility
1
DNA methylation
Target of assay
21
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
14
October, 2019
11
May, 2019
6
August, 2021
3
February, 2020
3
July, 2019
2
February, 2021
2
March, 2020
1
November, 2017
Available data
28
bam
9
tsv
6
bigWig
3
hic
2
bed bed3+
2
bed broadPeak
2
bedpe bed3+
2
bigBed broadPeak
2
hdf5
2
tagAlign
1
bed narrowPeak
1
bigBed narrowPeak
1
fastq
1
tar
Organism
42
Homo sapiens
Biosample type
27
tissue
13
primary cell
2
cell line
Organ
310
pancreas
257
liver
230
epithelium
147
kidney
124
heart
113
connective tissue
92
bone element
67
brain
65
adipose tissue
51
eye
44
vasculature
42
blood vessel
42
musculature of body
26
limb
19
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
8
embryo
8
skeleton
8
spleen
4
gonad
4
ovary
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
42
AMP
Genome assembly (visualization)
GRCh38
159
hg19
Lab
42
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
CRISPRi RNA-seq
pCHi-C
assembly!
GRCh38
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
FAIRE-seq
WGBS
tissue
aorta
2
4
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
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primary cell
endothelial cell of umbilical vein
7
2
1
brain microvascular endothelial cell
1
1
endothelial cell of hepatic sinusoid
1
cell line
smooth muscle cell of the coronary artery
2
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