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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
9
total RNA-seq
6
single cell RNA-seq
2
STARR-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
22
DNA binding
15
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
6
histone
6
histone modification
5
control
4
narrow histone mark
2
broad histone mark
1
RNA binding protein
Date released
318
November, 2017
194
May, 2020
69
February, 2021
63
December, 2017
54
August, 2017
54
October, 2019
53
November, 2018
50
May, 2019
41
August, 2021
40
May, 2022
35
February, 2023
20
July, 2019
7
June, 2019
7
March, 2020
5
December, 2019
5
January, 2019
4
February, 2020
1
December, 2018
Available data
17
bed narrowPeak
17
bigWig
15
tsv
4
bam
4
tagAlign
3
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
41
Homo sapiens
Biosample type
31
cell line
6
tissue
4
primary cell
Organ
130
kidney
92
heart
35
liver
8
embryo
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
41
AMP
Genome assembly (visualization)
18
hg19
3
GRCh38
Lab
31
Bing Ren, UCSD
10
AMP-T2D consortium
assay_title!
CRISPRi RNA-seq
BIOSAMPLE
ASSAY
41 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
STARR-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
18
9
2
1
1
tissue
aorta
4
pulmonary artery
2
primary cell
hepatocyte
4
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