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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
4
ATAC-seq
2
Capture-C
Assay category
15
DNA binding
4
DNA accessibility
Target of assay
8
histone
8
histone modification
6
transcription factor
5
control
4
broad histone mark
narrow histone mark
Date released
8
December, 2017
7
August, 2017
4
February, 2023
2
August, 2021
Available data
250
bam
219
bigWig
131
tsv
108
fastq
92
bed narrowPeak
28
tagAlign
21
bed bed3+
12
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
21
Homo sapiens
Biosample type
199
tissue
35
primary cell
21
in vitro differentiated cells
3
cell line
2
stem cell
Organ
13
connective tissue
2
embryo
Project
21
AMP
Genome assembly (visualization)
21
hg19
15
GRCh38
Lab
19
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
Audit category:
8
inconsistent control read length
assay_title!
CRISPRi RNA-seq
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
ATAC-seq
Capture-C
in vitro differentiated cells
adipocyte
7
1
1
Posterior foregut
2
definitive endodermal cell
2
immature adipocyte
2
pancreatic endoderm
2
primitive gut cell
2
osteoblast
1
preadipocyte
1
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