Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
490
ChIP-seq
184
total RNA-seq
22
ATAC-seq
5
WGBS
4
DNase-seq
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
490
DNA binding
188
Transcription
26
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
107
control
100
histone modification
99
histone
82
recombinant protein
58
RNA binding protein
narrow histone mark
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
308
November, 2017
167
May, 2020
56
December, 2017
53
November, 2018
41
August, 2017
40
May, 2022
29
August, 2021
8
July, 2019
5
January, 2019
4
October, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
Available data
621
bam
561
bigWig
446
fastq
386
bed narrowPeak
342
bigBed narrowPeak
169
tsv
55
bed broadPeak
55
bigBed broadPeak
44
tagAlign
7
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
719
Homo sapiens
Biosample type
392
cell line
317
tissue
primary cell
10
in vitro differentiated cells
Organ
719
liver
616
connective tissue
558
pancreas
477
adipose tissue
342
heart
308
kidney
181
blood vessel
181
vasculature
158
bone element
151
brain
133
artery
107
limb
104
epithelium
73
musculature of body
60
blood
60
bodily fluid
54
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
719
AMP
Genome assembly (visualization)
562
hg19
481
GRCh38
Lab
650
AMP-T2D consortium
40
Karen Mohlke, UNC
29
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
assay_title!
CRISPRi RNA-seq
target.investigated_as!
narrow histone mark
biosample_type!
primary cell
BIOSAMPLE
ASSAY
719 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
369
14
1
1
2
2
2
1
tissue
liver
103
167
20
3
2
1
1
1
1
1
right lobe of liver
8
3
1
1
2
2
in vitro differentiated cells
hepatocyte
10
Download