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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
543
ChIP-seq
196
total RNA-seq
42
DNase-seq
31
ATAC-seq
8
Hi-C
6
WGBS
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
543
DNA binding
200
Transcription
73
DNA accessibility
8
3D chromatin structure
8
DNA methylation
1
DNA sequencing
Target of assay
338
transcription factor
152
histone modification
151
histone
125
control
82
recombinant protein
76
broad histone mark
narrow histone mark
58
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
308
November, 2017
167
May, 2020
61
October, 2019
56
December, 2017
53
November, 2018
41
August, 2017
40
May, 2022
34
June, 2019
31
August, 2021
15
July, 2019
9
February, 2021
5
December, 2019
5
January, 2019
5
May, 2019
4
February, 2020
3
March, 2020
1
December, 2018
Available data
731
bam
647
bigWig
468
bed narrowPeak
446
fastq
414
bigBed narrowPeak
181
tsv
93
bed broadPeak
93
bigBed broadPeak
47
bed bed3+
46
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
838
Homo sapiens
Biosample type
424
tissue
392
cell line
12
primary cell
10
in vitro differentiated cells
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
353
heart
339
kidney
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
838
AMP
Genome assembly (visualization)
655
hg19
573
GRCh38
Lab
769
AMP-T2D consortium
40
Karen Mohlke, UNC
29
Bing Ren, UCSD
Audit category:
27
inconsistent control
2
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
assay_title!
CRISPRi RNA-seq
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
838 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
103
167
2
20
1
3
1
1
1
1
tibial nerve
27
5
2
1
tibial artery
19
1
2
1
muscle of leg
5
13
1
muscle of arm
17
+ See 10 more…
cell line
HepG2
369
14
1
2
1
2
2
1
primary cell
hepatocyte
2
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
10
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