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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
Assay category
58
DNA binding
Target of assay
331
control
211
histone
211
histone modification
108
broad histone mark
103
narrow histone mark
58
transcription factor
13
RNA binding protein
5
nucleotide modification
Date released
33
November, 2017
12
May, 2021
11
August, 2021
1
April, 2019
1
August, 2017
Available data
41
bigWig
37
bed narrowPeak
34
bam
34
fastq
26
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
3
tar
Organism
58
Homo sapiens
Biosample type
44
cell line
12
in vitro differentiated cells
1
primary cell
1
tissue
Organ
44
liver
1
kidney
Project
58
AMP
Genome assembly (visualization)
453
hg19
GRCh38
Lab
35
AMP-T2D consortium
12
Kyle Gaulton, UCSD
11
Bing Ren, UCSD
Audit category:
missing controlled_by
Audit category:
1
inconsistent control read length
assay_title!
CRISPRi RNA-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
assembly!
GRCh38
BIOSAMPLE
ASSAY
58 results
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ChIP-seq
cell line
HepG2
44
in vitro differentiated cells
embryonic stem cell
12
primary cell
skeletal muscle myoblast
1
tissue
kidney
1
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