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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
189
total RNA-seq
ATAC-seq
6
DNase-seq
5
WGBS
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
552
DNA binding
193
Transcription
7
DNA methylation
6
DNA accessibility
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
53
August, 2017
53
November, 2018
34
August, 2021
20
May, 2022
9
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
2
February, 2021
2
June, 2019
2
March, 2020
1
February, 2020
Available data
678
bam
600
bigWig
463
fastq
418
bed narrowPeak
357
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
csv
1
vcf
Organism
764
Homo sapiens
Biosample type
398
cell line
339
tissue
15
in vitro differentiated cells
12
primary cell
Organ
783
pancreas
764
liver
656
connective tissue
485
adipose tissue
411
epithelium
343
heart
279
brain
278
kidney
185
vasculature
179
blood vessel
147
bone element
110
limb
96
artery
89
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
20
lung
20
vein
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
764
AMP
Genome assembly (visualization)
599
hg19
528
GRCh38
Lab
714
AMP-T2D consortium
30
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
Capture-C
Hi-C
ATAC-seq
BIOSAMPLE
ASSAY
764 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
2
2
1
tissue
liver
145
167
2
3
1
1
1
1
right lobe of liver
10
3
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
hepatic stellate cell
1
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