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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
DNase-seq
87
ChIP-seq
2
ATAC-seq
Assay category
180
DNA accessibility
87
DNA binding
Target of assay
44
transcription factor
43
histone
43
histone modification
24
broad histone mark
19
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
163
June, 2019
64
November, 2017
21
August, 2017
9
November, 2018
5
October, 2019
4
October, 2017
1
March, 2019
Available data
2776
bam
2550
bigWig
1516
bed narrowPeak
1330
tsv
942
fastq
927
bigBed narrowPeak
291
tagAlign
267
bed broadPeak
236
bigBed broadPeak
234
bed bed3+
160
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
267
Homo sapiens
Biosample type
207
tissue
59
cell line
primary cell
1
in vitro differentiated cells
Organ
68
kidney
61
liver
45
musculature of body
36
brain
36
limb
27
heart
18
ureter
15
pancreas
5
blood vessel
5
vasculature
4
artery
4
connective tissue
3
adipose tissue
3
eye
2
nerve
1
spleen
Project
267
AMP
Genome assembly (visualization)
250
hg19
231
GRCh38
Lab
265
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
assay_title!
Capture-C
biosample_type!
primary cell
BIOSAMPLE
ASSAY
267 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 45 more…
cell line
HepG2
58
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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