Experiment Matrix – Common Metabolic Diseases Genome Atlas

Experiment Matrix

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BIOSAMPLE

	ASSAY
370 results Clear Filters	total RNA-seq	ATAC-seq	pCHi-C	Hi-C	MeRIP-seq	STARR-seq	GRO-seq	CRISPR genome editing followed by DNA sequencing	DNase-seq	HiChIP	single cell RNA-seq	CRISPR genome editing followed by sgRNA sequencing	MPRA	WGBS	shRNA RNA-seq	siRNA RNA-seq	whole genome sequencing assay
in vitro differentiated cells
cardiomyocytes	59
cardiac precursors (cardiac muscle cell)	19	1		1
neural progenitor cell	7	10
adipocyte	5	8							1
embryonic stem cell	7	6	1
cardiomyocytes (cardiac muscle cell)	3	1	2	2							2
induced pluripotent stem cell	9
Pancreatic progenitors (progenitor cell of endocrine pancreas)		5
chondrocyte		5
pancreatic endoderm	4						1
immature adipocyte	2	2
definitive endodermal cell	2						1
lymphocyte of B lineage (iPSC)	1		1	1
primitive gut cell	2						1
endocrine cell	2
posterior foregut	2
preadipocyte	1	1
Posterior foregut							1
Progenitor cell of Hypothalamus (neural progenitor cell)		1
cardiac fibroblast	1
endothelial cell	1
hematopoietic multipotent progenitor cell	1
intermediate cardiomyocytes	1
intermediate endothelial cell	1
intermediate smooth muscle cell	1
islet precursor cell	1
mesodermal cell (lineage marker-negative)	1
mesodermal cell (pacemaker intermediate)	1
neuron cell of Hypothalamus (neuron)		1
osteoblast		1
smooth muscle cell	1
stem cell	1
white fat cell			1
cell line
EndoC_BH1	33	19		1	6			3		2		1
smooth muscle cell of the coronary artery	52	8
HepG2	14	1	2	2		2								1			1
H1-hESC	8
EndoC-BH1															1	1
HEK293T						2
Panc1				1					1
RCC 7860 vector	1		1
early embryonic cell	2
glomerular visceral epithelial cell	1								1
GM12878		1
MCF-7			1
MIN6													1
RCC 7860 HIF1a re-expression	1
RCC 7860 HIF2a over-expression	1
RCC 7860 VHL			1
Synthesized DNA						1
fibroblast cell line			1