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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ATAC-seq
43
ChIP-seq
29
total RNA-seq
27
DNase-seq
8
single cell RNA-seq
7
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
145
DNA accessibility
43
DNA binding
39
Transcription
8
DNA methylation
6
3D chromatin structure
Target of assay
33
histone
33
histone modification
17
broad histone mark
16
narrow histone mark
11
control
2
RNA binding protein
2
transcription factor
Date released
98
May, 2020
32
October, 2019
30
June, 2019
29
July, 2019
20
May, 2021
6
February, 2023
6
November, 2020
5
April, 2018
5
December, 2019
4
August, 2021
3
February, 2021
2
May, 2019
1
August, 2017
1
March, 2020
Available data
388
bam
354
bigWig
fastq
156
bed narrowPeak
155
tsv
86
bigBed narrowPeak
46
bed broadPeak
46
bigBed broadPeak
32
bed bed3+
16
tagAlign
8
bed bedMethyl
8
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
242
Homo sapiens
Biosample type
1983
tissue
242
primary cell
103
cell line
89
in vitro differentiated cells
3
stem cell
Organ
76
epithelium
30
vasculature
28
blood vessel
28
kidney
22
connective tissue
22
vein
13
liver
12
brain
7
heart
6
musculature of body
5
eye
5
pancreas
2
adipose tissue
2
artery
1
pericardium
Project
242
AMP
Genome assembly (visualization)
153
hg19
101
GRCh38
Lab
242
AMP-T2D consortium
234
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
1
ITG
Audit category:
inconsistent ontology term
1
audit script error
assay_title!
Capture-C
files.file_type!
fastq
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
242 results
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ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
single cell RNA-seq
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
CD4-positive, alpha-beta memory T cell
22
endothelial cell of umbilical vein
17
2
2
1
monocyte
15
1
1
1
hepatocyte
4
5
1
1
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