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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
166
ATAC-seq
161
ChIP-seq
125
total RNA-seq
59
single cell RNA-seq
41
WGBS
29
snATAC-seq
26
DNase-seq
17
pCHi-C
9
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
Assay category
221
DNA accessibility
186
Transcription
161
DNA binding
51
DNA methylation
9
3D chromatin structure
Target of assay
143
histone
143
histone modification
77
broad histone mark
66
narrow histone mark
16
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
55
June, 2019
October, 2019
31
July, 2019
18
September, 2020
12
February, 2023
8
January, 2021
6
November, 2020
5
April, 2018
5
December, 2019
5
May, 2019
4
August, 2021
3
February, 2021
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
Available data
590
bigWig
578
bam
fastq
274
bed narrowPeak
268
tsv
153
zippedFastqFolder
100
tagAlign
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
Organism
645
Homo sapiens
Biosample type
2158
tissue
645
primary cell
243
in vitro differentiated cells
203
cell line
6
stem cell
Organ
135
epithelium
88
pancreas
36
connective tissue
25
kidney
14
musculature of body
13
heart
13
liver
12
brain
10
vasculature
8
blood
8
bodily fluid
7
blood vessel
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
1
vein
Project
285
AMP
204
T1D
155
HPAP
1
ITG
Genome assembly (visualization)
376
hg19
285
GRCh38
Lab
250
AMP-T2D consortium
239
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
1
ITG
Audit category:
45
inconsistent ontology term
3
audit script error
assay_title!
Capture-C
files.file_type!
fastq
month_released!
October, 2019
BIOSAMPLE
ASSAY
645 results
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ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
monocyte
15
85
54
1
1
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
CD8-positive, alpha-beta T cell
2
33
4
1
pancreatic beta cell
13
16
1
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