Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
total RNA-seq
100
ChIP-seq
22
ATAC-seq
3
DNase-seq
Hi-C
3
WGBS
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
188
Transcription
100
DNA binding
25
DNA accessibility
4
DNA methylation
1
DNA sequencing
Target of assay
58
histone
58
histone modification
41
narrow histone mark
31
control
17
broad histone mark
11
transcription factor
1
RNA binding protein
Date released
194
May, 2020
40
May, 2022
34
August, 2021
26
August, 2017
9
July, 2019
7
October, 2019
5
December, 2019
3
February, 2021
2
June, 2019
2
March, 2020
1
February, 2020
Available data
681
bam
621
bigWig
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
csv
1
vcf
Organism
323
Homo sapiens
Biosample type
277
tissue
33
cell line
13
primary cell
Organ
580
connective tissue
464
pancreas
447
adipose tissue
390
heart
353
kidney
323
liver
262
brain
257
epithelium
225
vasculature
222
blood vessel
159
bone element
141
artery
118
limb
88
musculature of body
61
eye
43
nerve
20
lung
20
vein
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
323
AMP
Genome assembly (visualization)
232
hg19
188
GRCh38
Lab
253
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_title!
Capture-C
Hi-C
files.file_type!
fastq
BIOSAMPLE
ASSAY
323 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
78
20
2
1
1
1
right lobe of liver
3
1
1
2
cell line
HepG2
9
18
1
2
2
1
primary cell
hepatocyte
5
4
1
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
Download