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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
total RNA-seq
49
ChIP-seq
22
ATAC-seq
3
Hi-C
3
small RNA-seq
2
DNase-seq
1
RRBS
1
pCHi-C
Assay category
157
Transcription
49
DNA binding
24
DNA accessibility
3
3D chromatin structure
1
DNA methylation
Target of assay
38
histone
38
histone modification
33
narrow histone mark
11
transcription factor
5
broad histone mark
1
RNA binding protein
Date released
170
May, 2020
20
May, 2022
18
August, 2021
9
July, 2019
7
October, 2019
5
December, 2019
2
February, 2021
2
June, 2019
2
March, 2020
Available data
617
bigWig
585
bam
437
bed narrowPeak
fastq
354
bigBed narrowPeak
162
tsv
63
bed broadPeak
63
bigBed broadPeak
42
tagAlign
13
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
hdf5
Organism
235
Homo sapiens
Biosample type
205
tissue
17
cell line
13
primary cell
Organ
514
connective tissue
405
adipose tissue
295
pancreas
235
liver
188
heart
159
vasculature
156
blood vessel
147
brain
138
epithelium
129
kidney
96
limb
93
artery
71
musculature of body
70
bone element
34
eye
31
nerve
18
ureter
17
vein
12
skeleton
10
embryo
2
pericardium
1
blood
1
bodily fluid
1
pituitary gland
Project
235
AMP
Genome assembly (visualization)
235
hg19
188
GRCh38
Lab
200
AMP-T2D consortium
20
Karen Mohlke, UNC
15
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_title!
Capture-C
files.file_type!
fastq
BIOSAMPLE
ASSAY
235 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
small RNA-seq
DNase-seq
RRBS
pCHi-C
tissue
liver
147
32
20
1
1
right lobe of liver
2
2
cell line
HepG2
14
1
1
1
primary cell
hepatocyte
5
3
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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