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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
30
total RNA-seq
20
ATAC-seq
3
Hi-C
3
WGBS
3
pCHi-C
2
STARR-seq
1
DNase-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
41
DNA binding
31
Transcription
21
DNA accessibility
4
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
23
histone
23
histone modification
13
broad histone mark
11
transcription factor
10
narrow histone mark
7
control
1
RNA binding protein
Date released
40
May, 2022
31
August, 2021
26
August, 2017
3
July, 2019
2
February, 2021
2
March, 2020
1
February, 2020
1
May, 2020
Available data
bam
622
bigWig
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
106
Homo sapiens
Biosample type
71
tissue
33
cell line
2
primary cell
Organ
210
kidney
185
pancreas
182
heart
136
epithelium
106
liver
93
bone element
87
connective tissue
54
eye
51
vasculature
50
blood vessel
47
adipose tissue
42
brain
39
artery
37
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
106
AMP
Genome assembly (visualization)
39
hg19
Lab
40
Karen Mohlke, UNC
35
AMP-T2D consortium
31
Bing Ren, UCSD
assay_title!
Capture-C
files.file_type!
fastq
bam
BIOSAMPLE
ASSAY
106 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
STARR-seq
DNase-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
23
20
20
1
2
1
1
right lobe of liver
1
1
1
cell line
HepG2
18
9
1
2
2
1
primary cell
endothelial cell of hepatic sinusoid
1
hepatocyte
1
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