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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
246
total RNA-seq
100
ChIP-seq
84
RNA microarray
34
ATAC-seq
4
pCHi-C
3
DNase-seq
3
Hi-C
3
WGBS
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
250
Transcription
100
DNA binding
37
DNA accessibility
4
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
58
histone
58
histone modification
41
narrow histone mark
31
control
17
broad histone mark
11
transcription factor
1
RNA binding protein
Date released
194
May, 2020
153
February, 2021
40
May, 2022
35
August, 2021
26
August, 2017
10
July, 2019
8
February, 2023
7
October, 2019
5
December, 2019
3
March, 2020
2
June, 2019
1
February, 2020
1
May, 2021
Available data
747
bam
680
bigWig
fastq
449
bed narrowPeak
358
bigBed narrowPeak
232
tsv
88
txt
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
5
bed bed3
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
485
Homo sapiens
Biosample type
436
tissue
34
cell line
15
primary cell
Organ
581
connective tissue
473
pancreas
447
adipose tissue
393
heart
354
kidney
326
liver
265
brain
265
epithelium
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
484
AMP
1
T1D
Genome assembly (visualization)
305
hg19
254
GRCh38
Lab
413
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
1
inconsistent replicate
assay_title!
Capture-C
files.file_type!
fastq
BIOSAMPLE
ASSAY
485 results
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total RNA-seq
ChIP-seq
RNA microarray
ATAC-seq
pCHi-C
DNase-seq
Hi-C
WGBS
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
78
20
1
1
2
1
1
bone element
84
bone tissue
58
right lobe of liver
3
1
1
2
acetabular part of hip bone
1
1
+ See 11 more…
cell line
HepG2
9
18
1
2
1
2
1
primary cell
hepatocyte
5
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
megakaryocyte
1
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