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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
total RNA-seq
166
ChIP-seq
39
DNase-seq
30
ATAC-seq
7
Hi-C
4
WGBS
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
195
Transcription
166
DNA binding
69
DNA accessibility
7
3D chromatin structure
5
DNA methylation
1
DNA sequencing
Target of assay
107
histone
107
histone modification
56
narrow histone mark
51
broad histone mark
48
control
11
transcription factor
1
RNA binding protein
Date released
194
May, 2020
76
October, 2019
40
May, 2022
35
August, 2021
34
June, 2019
26
August, 2017
15
July, 2019
9
February, 2021
7
May, 2019
5
December, 2019
4
February, 2020
3
March, 2020
Available data
795
bam
713
bigWig
533
bed narrowPeak
fastq
442
bigBed narrowPeak
181
tsv
99
bed broadPeak
99
bigBed broadPeak
86
tagAlign
49
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
448
Homo sapiens
Biosample type
400
tissue
34
cell line
14
primary cell
Organ
581
connective tissue
473
pancreas
447
adipose tissue
393
heart
354
kidney
326
liver
265
brain
265
epithelium
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
448
AMP
Genome assembly (visualization)
331
hg19
284
GRCh38
Lab
377
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
1
inconsistent replicate
assay_title!
Capture-C
files.file_type!
fastq
BIOSAMPLE
ASSAY
448 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
78
20
1
2
1
1
1
tibial nerve
5
35
2
1
tibial artery
1
23
2
1
muscle of leg
7
13
1
muscle of arm
17
+ See 11 more…
cell line
HepG2
9
18
1
1
2
2
1
primary cell
hepatocyte
5
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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